Skip to Main Content

The University of Tennessee

University of Tennessee Genome Science & Technology

Frequently Used Tools:



Welcome! » Publications


Publications

Selected publications by recent GST graduates.

  • Wu J, Cho HP, Rhee DB, Johnson DK, Dunlap J, Liu Y, Wang Y. Cdc14B depletion leads to centriole amplification, and its overexpression prevents unscheduled centriole duplication. J Cell Biol. 2008 May 5;181(3):475-83.

  • Savidor A, Donahoo RS, Hurtado-Gonzales O, Land ML, Shah MB, Lamour KH, McDonald WH. Cross-species global proteomics reveals conserved and unique processes in Phytophthora sojae and Phytophthora ramorum. Mol Cell Proteomics. 2008 Aug;7(8):1501-16. Epub 2008 Mar 3.
     
  • Ellrott K, Guo JT, Olman V, Xu Y. Improving the performance of protein threading using insertion/deletion frequency arrays. J Bioinform Comput Biol. 2008 Jun;6(3):585-602.
     
  • Pan C, Oda Y, Lankford PK, Zhang B, Samatova NF, Pelletier DA, Harwood CS, Hettich RL. Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics. Mol Cell Proteomics. 2008 May;7(5):938-48. Epub 2007 Dec 20.
     
  • Ozen C, Norris AL, Land ML, Tjioe E, Serpersu EH. Detection of specific solvent rearrangement regions of an enzyme: NMR and ITC studies with aminoglycoside phosphotransferase(3')-IIIa. Biochemistry. 2008 Jan 8;47(1):40-9.
     
  • Thompson MR, Thompson DK, Hettich RL. Systematic assessment of the benefits and caveats in mining microbial post-translational modifications from shotgun proteomic data: the response of Shewanella oneidensis to chromate exposure. J Proteome Res. 2008 Feb;7(2):648-58.
     
  • Hervey WJ 4th, Strader MB, Hurst GB. Comparison of digestion protocols for microgram quantities of enriched protein samples. J Proteome Res. 2007 Aug;6(8):3054-61.
     
  • Savidor A, Donahoo RS, Hurtado-Gonzales O, Verberkmoes NC, Shah MB, Lamour KH, McDonald WH. Expressed peptide tags: an additional layer of data for genome annotation. J Proteome Res. 2006 Nov;5(11):3048-58.
     
  • Ozen C, Malek JM, Serpersu EH. Dissection of aminoglycoside-enzyme interactions: a calorimetric and NMR study of neomycin B binding to the aminoglycoside phosphotransferase(3')-IIIa. J Am Chem Soc. 2006 Nov 29;128(47):15248-54.
     
  • Desai J, Shannon ME, Johnson MD, Ruff DW, Hughes LA, Kerley MK, Carpenter DA, Johnson DK, Rinchik EM, Culiat CT. Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects. Hum Mol Genet. 2006 Apr 15;15(8):1329-41.
     
  • Pan C, Kora G, McDonald WH, Tabb DL, VerBerkmoes NC, Hurst GB, Pelletier DA, Samatova NF, Hettich RL. ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation. Anal Chem. 2006 Oct 15;78(20):7121-31.
     
  • Ellrott K, Guo JT, Olman V, Xu Y. A generalized threading model using integer programming that allows for secondary structure element deletion.Genome Inform. 2006;17(2):248-58.
     
  • Wang Y, Giannone RJ, Liu Y. Telomere sister chromatid exchange in telomerase deficient murine cells. Cell Cycle. 2005 Oct;4(10):1320-2. Epub 2005 Oct 2.
     
  • Wang Y, Erdmann N, Giannone RJ, Wu J, Gomez M, Liu Y An increase in telomere sister chromatid exchange in murine embryonic stem cells possessing critically shortened telomeres.. Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10256-60.

  • Sullivan CJ, Morrell JL, Allison DP, Doktycz MJ. Mounting of Escherichia coli spheroplasts for AFM imaging. Ultramicroscopy. 2005 Nov;105(1-4):96-102. Epub 2005 Jul 13.